Disease: Secondary malignant neoplasm of lymph node
Source: BEFREE ×
Variant Gene DSI v DPI v Chr Position Consequence Alleles Class AF EXOME AF GENOME Num. diseases
rs6024836
FAM210B ; AURKA
0.851 0.160 20 56369012 downstream gene variant G/A snv 0.42 6
rs10491121
LOC101927369 ; CCL4
0.882 0.120 17 36102943 upstream gene variant G/A snv 0.32 5
rs10814325
RECK
0.827 0.200 9 36036597 upstream gene variant T/A;C;G snv 7
rs1800624
PBX2 ; AGER
0.658 0.480 6 32184610 upstream gene variant A/G;T snv 33
rs2071559
KDR
0.667 0.680 4 55126199 upstream gene variant A/G snv 0.53 26
rs2275913
IL17A
0.514 0.760 6 52186235 upstream gene variant G/A snv 0.28 105
rs653765
ADAM10
0.763 0.240 15 58749813 upstream gene variant T/C;G snv 0.45 10
rs6691378
CHI3L1
0.882 0.160 1 203187994 upstream gene variant G/A snv 0.19 6
rs699947
VEGFA
0.570 0.680 6 43768652 upstream gene variant A/C;T snv 67
rs1131691014
TP53
0.439 0.800 17 7676154 frameshift variant -/C ins 213
rs10889677
IL23R
0.627 0.720 1 67259437 3 prime UTR variant C/A snv 0.27 40
rs11077
POLR1C ; XPO5
0.732 0.320 6 43523209 3 prime UTR variant T/G snv 0.47 14
rs1360485
HMGB1
0.742 0.320 13 30457747 3 prime UTR variant C/T snv 0.58 15
rs7628626
TIMMDC1 ; CD80
0.925 0.120 3 119525574 3 prime UTR variant A/C snv 0.82 2
rs7963551
RAD52
0.807 0.160 12 912349 3 prime UTR variant T/G snv 0.13 7
rs145204276
ZBTB37 ; SNORD74 ; SNORD75 ; GAS5 ; SNORD77 ; SNORA103 ; SNORD76
0.658 0.320 1 173868254 splice donor variant CAAGG/- delins 8.8E-02 31
rs1800872
IL19 ; IL10
0.495 0.840 1 206773062 5 prime UTR variant T/G snv 0.69 118
rs2249825
HMGB1
0.695 0.440 13 30463766 5 prime UTR variant G/A;C;T snv 22
rs11615
ERCC1
0.572 0.640 19 45420395 synonymous variant A/G snv 0.50 0.55 62
rs10877887
LINC01465 ; MIRLET7I
0.701 0.440 12 62603400 non coding transcript exon variant T/C snv 0.42 18
rs2839698
MRPL23 ; MIR675 ; H19
0.662 0.520 11 1997623 non coding transcript exon variant G/A snv 0.41 25
rs3741219
MRPL23 ; H19 ; HOTS
0.776 0.280 11 1995389 non coding transcript exon variant A/G snv 0.42 10
rs6983267
PCAT1 ; CCAT2 ; CASC8 ; POU5F1B
0.578 0.440 8 127401060 non coding transcript exon variant G/T snv 0.37 55
rs1042522
TP53
0.426 0.800 17 7676154 missense variant G/C;T snv 0.67 242
rs1047781
LOC105447645 ; FUT2
0.790 0.200 19 48703374 missense variant A/T snv 3.6E-02 1.2E-02 9